Locus Search
Locus Search helps find gene and TE records for C. rubella, C. orientalis, and C. grandiflora.
Search Pages
Find a Locus
Go to a species-specific Locus Search page > Enter a gene ID, TE ID, keyword, alias, TE type, or ortholog ID > Click the Search button > Open the matching locus.
Search Examples
| Search type | Example query | Description |
|---|---|---|
| Gene ID | Cr1G00010 | Search for a gene using a species-specific gene ID. |
| TE ID | TE_homo_0 | Search for a transposable element using a TE identifier. |
| TE type | Class I | Search for TE records by broad TE class. |
| TE family/type | LTR | Search for LTR retrotransposon-related records. |
| TE superfamily | Gypsy | Search for Gypsy retrotransposon-related records. |
| Repeat type | Satellite | Search for satellite repeat-related records. |
| Gene alias | RDR2 | Search for a gene using a functional annotation alias. |
| Ortholog ID | AT4G11130 | In a species-specific search page, search for an orthologous Arabidopsis thaliana gene ID when available. |
| Ortholog ID | Cg1G00010 | In the C. rubella search page, search for an orthologous C. grandiflora gene ID when available. |
Gene aliases are derived from functional annotations in TAIR12 when an Arabidopsis thaliana homolog and annotation are available.
Ortholog ID search depends on the integrated homolog table for each species. If no result is found, check that the ID belongs to a supported species and visit the Troubleshooting page for more checks.
Gene / TE Card
Clicking a search result opens a gene or TE card page. The card page summarizes available information for that locus or feature.
A Gene / TE Card may include:
- Locus or feature ID
- Feature type, such as gene, TE, repeat, or TE subclass
- Genomic location
- Functional annotation when available
- Ortholog or homolog information when available
- Links to related species or Arabidopsis thaliana annotations when available
- Sequence or download-related links when available
- A link to inspect the locus in the genome browser when available
Use the Locus Search page > Open a result > Review the Gene / TE Card > Follow available links to genome browser views, ortholog information, or related resources.
Not every card has all fields. Available fields depend on the feature type and the annotation data currently available in CapBase.