Getting Started

CapBase is a static genomics resource for Capsella research. It brings together species pages, locus search, ortholog finding, genome browsers, synteny views, and a data portal for downloadable genome resources.

Main Functions

• Browse species pages for Capsella rubella, Capsella orientalis, and Capsella grandiflora.
• Search genes, TEs, and loci with species-specific Locus Search pages.
• Find homologs and orthologs with the Ortholog Finder.
• View gene and TE annotation tracks in Genome Browser pages.
• Inspect comparative genome structure with the Synteny Browser.
• Download genome assemblies, annotations, sequence files, and homolog/ortholog tables from the Data Portal.

Suggested First Workflow

Open a species page > Search a locus or open the genome browser > Review related annotations > Download matching datasets from the Data Portal when needed.